allele age dtermination

P. Fearnhead, R. M. Harding, J. A. Schneider, S. Myers, and P. Donnelly
Application of Coalescent Methods to Reveal Fine-Scale Rate Variation and Recombination Hotspots
Genetics, August 1, 2004; 167(4): 2067 - 2081.


J. M. Burrows, L. Bromham, M. Woolfit, G. Piganeau, J. Tellam, G. Connolly, N. Webb, L. Poulsen, L. Cooper, S. R. Burrows, et al.
Selection Pressure-Driven Evolution of the Epstein-Barr Virus-Encoded Oncogene LMP1 in Virus Isolates from Southeast Asia
J. Virol., July 1, 2004; 78(13): 7131 - 7137.


P. Lemey, O. G. Pybus, A. Rambaut, A. J. Drummond, D. L. Robertson, P. Roques, M. Worobey, and A.-M. Vandamme
The Molecular Population Genetics of HIV-1 Group O
Genetics, July 1, 2004; 167(3): 1059 - 1068.


J. D. Wall
Estimating Recombination Rates Using Three-Site Likelihoods
Genetics, July 1, 2004; 167(3): 1461 - 1473.


D. T. Haydon, A. D. S. Bastos, and P. Awadalla
Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments
J. Gen. Virol., May 1, 2004; 85(5): 1095 - 1100.


N. Li and M. Stephens
Modeling Linkage Disequilibrium and Identifying Recombination Hotspots Using Single-Nucleotide Polymorphism Data
Genetics, December 1, 2003; 165(4): 2213 - 2233.


S. D. Polley, W. Chokejindachai, and D. J. Conway
Allele Frequency-Based Analyses Robustly Map Sequence Sites Under Balancing Selection in a Malaria Vaccine Candidate Antigen
Genetics, October 1, 2003; 165(2): 555 - 561.


M. Anisimova, R. Nielsen, and Z. Yang
Effect of Recombination on the Accuracy of the Likelihood Method for Detecting Positive Selection at Amino Acid Sites
Genetics, July 1, 2003; 164(3): 1229 - 1236.